{"id":14809,"identifier":"JUELICH-DATA/B9SBOS","persistentUrl":"https://doi.org/10.26165/JUELICH-DATA/B9SBOS","protocol":"doi","authority":"10.26165","publisher":"Jülich DATA","publicationDate":"2024-06-18","storageIdentifier":"s3://10.26165/JUELICH-DATA/B9SBOS","datasetVersion":{"id":529,"datasetId":14809,"datasetPersistentId":"doi:10.26165/JUELICH-DATA/B9SBOS","storageIdentifier":"s3://10.26165/JUELICH-DATA/B9SBOS","versionNumber":1,"versionMinorNumber":0,"versionState":"RELEASED","lastUpdateTime":"2024-06-18T09:28:46Z","releaseTime":"2024-06-18T09:28:46Z","createTime":"2024-06-10T11:19:34Z","license":"CCBY","fileAccessRequest":false,"metadataBlocks":{"citation":{"displayName":"Citation Metadata","fields":[{"typeName":"title","multiple":false,"typeClass":"primitive","value":"Study Data to VRoot: An XR-Based Application for Manual Root System Architecture Reconstruction"},{"typeName":"author","multiple":true,"typeClass":"compound","value":[{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Baker, Dirk"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Forschungszentrum Jülich GmbH"},"authorIdentifierScheme":{"typeName":"authorIdentifierScheme","multiple":false,"typeClass":"controlledVocabulary","value":"ORCID"},"authorIdentifier":{"typeName":"authorIdentifier","multiple":false,"typeClass":"primitive","value":"0000-0003-1542-1062"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Zielasko, Daniel"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Universität Trier"},"authorIdentifierScheme":{"typeName":"authorIdentifierScheme","multiple":false,"typeClass":"controlledVocabulary","value":"ORCID"},"authorIdentifier":{"typeName":"authorIdentifier","multiple":false,"typeClass":"primitive","value":"0000-0003-3451-4977"}}]},{"typeName":"datasetContact","multiple":true,"typeClass":"compound","value":[{"datasetContactName":{"typeName":"datasetContactName","multiple":false,"typeClass":"primitive","value":"Baker, Dirk"},"datasetContactAffiliation":{"typeName":"datasetContactAffiliation","multiple":false,"typeClass":"primitive","value":"Forschungszentrum Jülich GmbH"},"datasetContactEmail":{"typeName":"datasetContactEmail","multiple":false,"typeClass":"primitive","value":"d.baker@fz-juelich.de"}}]},{"typeName":"dsDescription","multiple":true,"typeClass":"compound","value":[{"dsDescriptionValue":{"typeName":"dsDescriptionValue","multiple":false,"typeClass":"primitive","value":"<h2>VRoot Study Data</h2>\r\n\r\n<p>This data has been collected during our user study analysing VRoot, an application for immersive root system architecture reconstruction. The study was a human participant mixed design laboratory study (n=20-1). Ethics approval was granted by the University of Trier and the study was conducted under the supervision of Dr. Daniel Zielasko.</p>\r\n\r\n<p>The presented data has 19 data points after 1 point in the +W condition was removed</p>\r\n\r\n<p>\r\nReference: \r\n\r\n VRoot: An XR-Based Application for Manual Root System Architecture Reconstruction\r\nDirk Norbert Baker, Tobias Selzner, Jens Henrik Gobbert, Hanno Scharr, Morris Riedel, Ebba Bora Hvannberg, Andrea Schnepf, Daniel Zielasko\r\nbioRxiv 2024.06.13.598253; doi: https://doi.org/10.1101/2024.06.13.598253 \r\n</p>\r\n\r\n<p>This data set consists of the following structure:</p>\r\n\r\n<ul>\r\n<li><b>noisy_111x111x100.raw</b>: Study data set that was measured, with noise applied to it, this is a volumetric image data set consisting of uint8 data as xz slices, (0.5, 0.5, 1.0) spacing</li>\r\n<li><b>study_111x111x100.raw</b>: Study data set that was measured, this is a volumetric image data set consisting of uint8 data as xz slices, (0.5, 0.5, 1.0) spacing</li>\r\n<li><b>training_111x111x190.raw</b>: Training data participants learned the study task on, this is a volumetric image data set consisting of uint8 data as xz slices, (0.5, 0.5, 1.0) spacing</li>\r\n<li><b>ueq.csv</b>: User Experience Questionnaire evaluation data</li>\r\n<li><b>subjective.csv</b>: Other questionnaire evaluation data, NASA Task Load Index Short and System Usability Scale, additionally data set ID, Water noise, and demographic information</li>\r\n<li><b>objective.csv</b>: Objective measurements from the root system architecture reconstruction of each participant</li>\r\n<li><b>survey.zip.archive</b>: Study description and questionnaires as PDF as well as study logic as XML, within the zip archive</li>\r\n<li><b>tracings.zip.archive</b>: The tracings of each participant, both VR and NMRooting, per ID within the zip archive.</li>\r\n</ul>\r\n\r\n<p>Note that the IDs present in the data are not the original participant IDs and have been further anonymized. We have collected and stored the original IDs.</p>"},"dsDescriptionDate":{"typeName":"dsDescriptionDate","multiple":false,"typeClass":"primitive","value":"2024-06-16"}}]},{"typeName":"subject","multiple":true,"typeClass":"controlledVocabulary","value":["Agricultural Sciences","Computer and Information Science"]},{"typeName":"publication","multiple":true,"typeClass":"compound","value":[{"publicationIDType":{"typeName":"publicationIDType","multiple":false,"typeClass":"controlledVocabulary","value":"doi"},"publicationIDNumber":{"typeName":"publicationIDNumber","multiple":false,"typeClass":"primitive","value":"10.1101/2024.06.13.598253"},"publicationURL":{"typeName":"publicationURL","multiple":false,"typeClass":"primitive","value":"https://doi.org/10.1101/2024.06.13.598253"}}]},{"typeName":"grantNumber","multiple":true,"typeClass":"compound","value":[{"grantNumberAgency":{"typeName":"grantNumberAgency","multiple":false,"typeClass":"primitive","value":"BMBF"},"grantNumberValue":{"typeName":"grantNumberValue","multiple":false,"typeClass":"primitive","value":"InHPC-DE project (01-H17001)"}},{"grantNumberAgency":{"typeName":"grantNumberAgency","multiple":false,"typeClass":"primitive","value":"EuroHPC/JU"},"grantNumberValue":{"typeName":"grantNumberValue","multiple":false,"typeClass":"primitive","value":"101101903 EUROCC2"}},{"grantNumberAgency":{"typeName":"grantNumberAgency","multiple":false,"typeClass":"primitive","value":"DFG"},"grantNumberValue":{"typeName":"grantNumberValue","multiple":false,"typeClass":"primitive","value":"EXC-2070 - 390732324 - PhenoRob"}},{"grantNumberAgency":{"typeName":"grantNumberAgency","multiple":false,"typeClass":"primitive","value":"BMBF"},"grantNumberValue":{"typeName":"grantNumberValue","multiple":false,"typeClass":"primitive","value":"CROP (ref. FKZ 728 031B0909A)"}}]},{"typeName":"depositor","multiple":false,"typeClass":"primitive","value":"Baker, Dirk"},{"typeName":"dateOfDeposit","multiple":false,"typeClass":"primitive","value":"2024-06-14"},{"typeName":"timePeriodCovered","multiple":true,"typeClass":"compound","value":[{"timePeriodCoveredStart":{"typeName":"timePeriodCoveredStart","multiple":false,"typeClass":"primitive","value":"2023-11-01"},"timePeriodCoveredEnd":{"typeName":"timePeriodCoveredEnd","multiple":false,"typeClass":"primitive","value":"2023-12-23"}}]},{"typeName":"dateOfCollection","multiple":true,"typeClass":"compound","value":[{"dateOfCollectionStart":{"typeName":"dateOfCollectionStart","multiple":false,"typeClass":"primitive","value":"2023-11-01"},"dateOfCollectionEnd":{"typeName":"dateOfCollectionEnd","multiple":false,"typeClass":"primitive","value":"2023-12-23"}}]},{"typeName":"kindOfData","multiple":true,"typeClass":"primitive","value":["Virtual MRI Data","User Study Objective Measurements","User Study Questionnaire","User Study Questionnaire responses"]},{"typeName":"software","multiple":true,"typeClass":"compound","value":[{"softwareName":{"typeName":"softwareName","multiple":false,"typeClass":"primitive","value":"Unreal Engine"},"softwareVersion":{"typeName":"softwareVersion","multiple":false,"typeClass":"primitive","value":"5.1"}},{"softwareName":{"typeName":"softwareName","multiple":false,"typeClass":"primitive","value":"NMRooting"}}]},{"typeName":"originOfSources","multiple":false,"typeClass":"primitive","value":"Study data consists of all used data points from our human participant laboratory user study conducted in the \"Virtual Reality Laboratory\" of IBG-3, Forschungszentrum Jülich GmbH."}]},"fzj":{"displayName":"FZJ Metadata","fields":[{"typeName":"institute","multiple":true,"typeClass":"controlledVocabulary","value":["IBG-3","JSC"]},{"typeName":"pof3","multiple":true,"typeClass":"controlledVocabulary","value":["Plant Science 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the .archive ending before unzipping","label":"tracings.zip.archive","restricted":false,"version":1,"datasetVersionId":529,"dataFile":{"id":14816,"persistentId":"","pidURL":"","filename":"tracings.zip.archive","contentType":"application/octet-stream","filesize":3633588,"description":"Remove the .archive ending before unzipping","storageIdentifier":"s3://juelich_data:19001d8e5c7-142a86b36e5f","rootDataFileId":-1,"checksum":{"type":"SHA-256","value":"b9f49559119a1c8967627e4e5ab2d0ffc2d5661f62ca0ec6d4f4d5cf34844617"},"creationDate":"2024-06-10"}},{"description":"Spacing 0.5 0.5 1","label":"training_111x111x190.raw","restricted":false,"version":2,"datasetVersionId":529,"dataFile":{"id":14810,"persistentId":"","pidURL":"","filename":"training_111x111x190.raw","contentType":"image/RAW","filesize":2340990,"description":"Spacing 0.5 0.5 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