{"id":49623,"identifier":"JUELICH-DATA/SOJ6SQ","persistentUrl":"https://doi.org/10.26165/JUELICH-DATA/SOJ6SQ","protocol":"doi","authority":"10.26165","publisher":"Jülich DATA","publicationDate":"2026-08-14","storageIdentifier":"s3://10.26165/JUELICH-DATA/SOJ6SQ","datasetVersion":{"id":1201,"datasetId":49623,"datasetPersistentId":"doi:10.26165/JUELICH-DATA/SOJ6SQ","storageIdentifier":"s3://10.26165/JUELICH-DATA/SOJ6SQ","versionNumber":1,"versionMinorNumber":0,"versionState":"RELEASED","lastUpdateTime":"2026-08-14T13:12:26Z","releaseTime":"2026-08-14T13:12:26Z","createTime":"2026-04-13T13:13:11Z","license":"CCBY","fileAccessRequest":false,"metadataBlocks":{"citation":{"displayName":"Citation Metadata","fields":[{"typeName":"title","multiple":false,"typeClass":"primitive","value":"Dataset of GrowScreen-Rhizo 3 shoot image analysis including trained U-Net CNN"},{"typeName":"author","multiple":true,"typeClass":"compound","value":[{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Constantin Eiteneuer"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Forschungszentrum Juelich - IBG-2"},"authorIdentifierScheme":{"typeName":"authorIdentifierScheme","multiple":false,"typeClass":"controlledVocabulary","value":"ORCID"},"authorIdentifier":{"typeName":"authorIdentifier","multiple":false,"typeClass":"primitive","value":"0000-0003-3170-3561"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Laura Verena Junker-Frohn"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Forschungszentrum Juelich - IBG-2"},"authorIdentifierScheme":{"typeName":"authorIdentifierScheme","multiple":false,"typeClass":"controlledVocabulary","value":"ORCID"},"authorIdentifier":{"typeName":"authorIdentifier","multiple":false,"typeClass":"primitive","value":"0000-0002-0655-6232"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Henning Lenz"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Forschungszentrum Juelich - IBG-2"},"authorIdentifierScheme":{"typeName":"authorIdentifierScheme","multiple":false,"typeClass":"controlledVocabulary","value":"ORCID"},"authorIdentifier":{"typeName":"authorIdentifier","multiple":false,"typeClass":"primitive","value":"0000-0002-8080-0328"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Mark Müller-Linow"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Forschungszentrum Juelich - IBG-2"},"authorIdentifierScheme":{"typeName":"authorIdentifierScheme","multiple":false,"typeClass":"controlledVocabulary","value":"ORCID"},"authorIdentifier":{"typeName":"authorIdentifier","multiple":false,"typeClass":"primitive","value":"0000-0002-6722-5437"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Kerstin A. Nagel"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Forschungszentrum Juelich - IBG-2"},"authorIdentifierScheme":{"typeName":"authorIdentifierScheme","multiple":false,"typeClass":"controlledVocabulary","value":"ORCID"},"authorIdentifier":{"typeName":"authorIdentifier","multiple":false,"typeClass":"primitive","value":"0000-0003-3025-0388"}}]},{"typeName":"datasetContact","multiple":true,"typeClass":"compound","value":[{"datasetContactName":{"typeName":"datasetContactName","multiple":false,"typeClass":"primitive","value":"Constantin Eiteneuer"},"datasetContactAffiliation":{"typeName":"datasetContactAffiliation","multiple":false,"typeClass":"primitive","value":"IBG-2: Plant Sciences, Forschungszentrum Jülich GmbH"},"datasetContactEmail":{"typeName":"datasetContactEmail","multiple":false,"typeClass":"primitive","value":"c.eiteneuer@fz-juelich.de"}}]},{"typeName":"dsDescription","multiple":true,"typeClass":"compound","value":[{"dsDescriptionValue":{"typeName":"dsDescriptionValue","multiple":false,"typeClass":"primitive","value":"The publication contains 1800 RGB images generated using the high throughput plant phenotyping platform GrowScreen-Rhizo 3. Shoots of barley, maize, and sunflower plants differing in plant developmental stages, with a maximum age of 3-4 weeks, were imaged by 6 cameras from 3 different view points (top view, 45°, side view) during multiple rhizotron experiments (for details, see Junker-Frohn et al., 2026). 600 images each for barley, maize, and sunflower plants and their corresponding manually annotated masks were split 5:1 for model evaluation and validation purposes.  \r\nThe pytorch U-Net implementation that was trained on the data for inference is included in this publication.  \r\n  \r\nFurthermore the publication contains 696 RGB images, imaged with the GrowScreen-Rhizo3 platform, and their corresponding measured leaf area and plant height. This data was used to train a Gaussian Process Regression model to predict leaf area. The trained model for inference is included in this publication."}}]},{"typeName":"subject","multiple":true,"typeClass":"controlledVocabulary","value":["Agricultural Sciences","Computer and Information Science"]},{"typeName":"keyword","multiple":true,"typeClass":"compound","value":[{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"shoot phenotyping"}},{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"non-invasive"}}]},{"typeName":"publication","multiple":true,"typeClass":"compound","value":[{"publicationCitation":{"typeName":"publicationCitation","multiple":false,"typeClass":"primitive","value":"Laura Verena Junker-Frohn, Henning Lenz, Shiyan Jia, Alexander Putz, Jens Wilhelm, Constantin Eiteneuer, Sascha Adels, Olaf Mück, Anna Galinski, Jonas Lentz, Fabio Fiorani, Mark Müller-Linow, Kerstin A. Nagel, GrowScreen-Rhizo 3 - automated large-scale high throughput greenhouse phenotyping of plant root and shoot development, Plant Phenomics, 2026, 100213, ISSN 2643-6515"},"publicationIDType":{"typeName":"publicationIDType","multiple":false,"typeClass":"controlledVocabulary","value":"doi"},"publicationIDNumber":{"typeName":"publicationIDNumber","multiple":false,"typeClass":"primitive","value":"10.1016/j.plaphe.2026.100213"},"publicationURL":{"typeName":"publicationURL","multiple":false,"typeClass":"primitive","value":"https://doi.org/10.1016/j.plaphe.2026.100213"}}]},{"typeName":"language","multiple":true,"typeClass":"controlledVocabulary","value":["English"]},{"typeName":"depositor","multiple":false,"typeClass":"primitive","value":"Grygosch, Lars"},{"typeName":"dateOfDeposit","multiple":false,"typeClass":"primitive","value":"2026-04-13"}]},"fzj":{"displayName":"FZJ Metadata","fields":[{"typeName":"institute","multiple":true,"typeClass":"controlledVocabulary","value":["IBG-2"]},{"typeName":"pof4","multiple":true,"typeClass":"controlledVocabulary","value":["Biological and environmental resources for sustainable use (POF4-2171)"]},{"typeName":"storage_location","multiple":true,"typeClass":"primitive","value":["https://datapub.fz-juelich.de/plantsciences/GrowScreen-Rhizo-3/"]}]}},"files":[{"label":"README.txt","restricted":false,"version":1,"datasetVersionId":1201,"dataFile":{"id":52801,"persistentId":"","pidURL":"","filename":"README.txt","contentType":"text/plain","filesize":5067,"storageIdentifier":"s3://juelich_data:19e63522a22-d0f0a5be567d","rootDataFileId":-1,"checksum":{"type":"SHA-256","value":"b18319635875a094380e4db23ed7f4b67dbb542e614ccf5f789e877480b71121"},"creationDate":"2026-05-26"}}],"citation":"Constantin Eiteneuer; Laura Verena Junker-Frohn; Henning Lenz; Mark Müller-Linow; Kerstin A. Nagel, 2026, \"Dataset of GrowScreen-Rhizo 3 shoot image analysis including trained U-Net CNN\", https://doi.org/10.26165/JUELICH-DATA/SOJ6SQ, Jülich DATA, V1"}}