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Metabolic Networks
This dataverse contains models and data related to metabolic networks and fluxomics.
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Supplement to Trans-dimensional Diffusive Nested Sampling for Metabolic Network Inference
Jul 16, 2024
Jadebeck, Johann Fredrik; Wiechert, Wolfgang; Nöh, Katharina, 2024, "Supplement to Trans-dimensional Diffusive Nested Sampling for Metabolic Network Inference", https://doi.org/10.26165/JUELICH-DATA/CXQROH, Jülich DATA, V1
Link to models, code and samples from diffusive nested sampling for the conference proceedings for the MaxEnt2024 conference.
Simulation Data for: Theorell-et-al.-Metabolic_Engineering-2024
Mar 22, 2024
Theorell, Axel; Jadebeck, Johann F.; Wiechert, Wolfgang; McFadden, Johnjoe; Nöh, Katharina, 2024, "Simulation Data for: Theorell-et-al.-Metabolic_Engineering-2024", https://doi.org/10.26165/JUELICH-DATA/BJK8GJ, Jülich DATA, V1
MCMC samples generated and analyzed in Theorell-et-al.-Metabolic_Engineering-2024
Replication Data for: HOPS: high-performance library for (non-)uniform sampling of convex-constrained models
Dec 18, 2020
Johann F. Jadebeck; Axel Theorell; Samuel Leweke; Katharina Nöh, 2020, "Replication Data for: HOPS: high-performance library for (non-)uniform sampling of convex-constrained models", https://doi.org/10.26165/JUELICH-DATA/YXLFKJ, Jülich DATA, V1
This collection contains showcased models and pre-processing results (determining an independent flux space and rounding) that are used as basis for benchmarking the uniform sampling performance of the CHHR implementations of the HOPS library [10.1093/bioinformatics/btaa872] (htt...
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